RNAspa
is a comparative structure prediction program for a set of RNA
sequences.
Download the source code of RNAspa version 1.1,
and the sample input file. The instructions can be found inside the source
file.
Here is the supplementary information.
The authors of RNAspa are: Yair Horesh
, Tirza Doniger
, Shulamit Michaeli
, and Ron Unger
Last update:
2/10/07
It
does so by initially running RNAsubopt (a component of Vienna Package).
Therefore, Vienna Package must be installed BEFORE
running RNAspa.
And the full reference is:
Yair Horesh, Tirza Doniger, Shulamit Michaeli and Ron Unger, RNAspa: a shortest
path approach for
comparative prediction of the secondary structure of ncRNA
molecules, BMC Bioinformatics, vol. 8:366, 2007